Iñaki Comas: search on Z-Library

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1

Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes

Comas, Iñaki, Borrell, Sonia, Roetzer, Andreas, Rose, Graham, Malla, Bijaya, Kato-Maeda, Midori, Galagan, James, Niemann, Stefan, Gagneux, Sebastien

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 647 KB

english, 2011

2

A role for systems epidemiology in tuberculosis research

Iñaki Comas, Sebastien Gagneux

Journal:

Trends in Microbiology

Year:

2011

Language:

english

File:

PDF, 732 KB

english, 2011

3

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

Comas, Iñaki, Coscolla, Mireia, Luo, Tao, Borrell, Sonia, Holt, Kathryn E, Kato-Maeda, Midori, Parkhill, Julian, Malla, Bijaya, Berg, Stefan, Thwaites, Guy, Yeboah-Manu, Dorothy, Bothamley, Graham, Me

Journal:

Nature Genetics

Year:

2013

Language:

english

File:

PDF, 1.21 MB

english, 2013

4

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis

Bos, Kirsten I., Harkins, Kelly M., Herbig, Alexander, Coscolla, Mireia, Weber, Nico, Comas, Iñaki, Forrest, Stephen A., Bryant, Josephine M., Harris, Simon R., Schuenemann, Verena J., Campbell, Tessa

Journal:

Year:

2014

Language:

english

File:

PDF, 3.78 MB

english, 2014

5

Evolutionary Trajectories of Beta-Lactamase CTX-M-1 Cluster Enzymes: Predicting Antibiotic Resistance

Novais, Ângela, Comas, Iñaki, Baquero, Fernando, Cantón, Rafael, Coque, Teresa M., Moya, Andrés, González-Candelas, Fernando, Galán, Juan-Carlos, Guttman, David S.

Journal:

Year:

2010

Language:

english

File:

PDF, 2.09 MB

english, 2010

6

TweetNorm: a benchmark for lexical normalization of Spanish tweets

Alegria, Iñaki, Aranberri, Nora, Comas, Pere R., Fresno, Víctor, Gamallo, Pablo, Padró, Lluis, San Vicente, Iñaki, Turmo, Jordi, Zubiaga, Arkaitz

Journal:

Language Resources and Evaluation

Year:

2015

Language:

english

File:

PDF, 551 KB

english, 2015

7

The effect size of type 2 diabetes mellitus on tuberculosis drug resistance and adverse treatment outcomes

Perez-Navarro, Lucia Monserrat, Restrepo, Blanca I., Fuentes-Dominguez, Francisco Javier, Duggirala, Ravindranath, Morales-Romero, Jaime, López-Alvarenga, Juan Carlos, Comas, Iñaki, Zenteno-Cuevas, Ro

Journal:

Year:

2017

Language:

english

File:

PDF, 802 KB

english, 2017

8

China’s tuberculosis epidemic stems from historical expansion of four strains of Mycobacterium tuberculosis

Liu, Qingyun, Ma, Aijing, Wei, Lanhai, Pang, Yu, Wu, Beibei, Luo, Tao, Zhou, Yang, Zheng, Hong-Xiang, Jiang, Qi, Gan, Mingyu, Zuo, Tianyu, Liu, Mei, Yang, Chongguang, Jin, Li, Comas, Iñaki, Gagneux, S

Journal:

Nature Ecology & Evolution

Year:

2018

Language:

english

File:

PDF, 9.79 MB

english, 2018

9

Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved

Comas, Iñaki, Chakravartti, Jaidip, Small, Peter M, Galagan, James, Niemann, Stefan, Kremer, Kristin, Ernst, Joel D, Gagneux, Sebastien

Journal:

Nature Genetics

Year:

2010

Language:

english

File:

PDF, 600 KB

english, 2010

10

Validating viral quasispecies with digital organisms: a re-examination of the critical mutation rate

Iñaki Comas, Andrés Moya, Fernando González-Candelas

Journal:

BMC Evolutionary Biology

Year:

2005

Language:

english

File:

PDF, 300 KB

english, 2005

11

Phylogenetic signal and functional categories in Proteobacteria genomes

Iñaki Comas, Andrés Moya, Fernando González-Candelas

Journal:

BMC Evolutionary Biology

Year:

2007

Language:

english

File:

PDF, 326 KB

english, 2007

12

Unraveling the evolutionary history of the phosphoryl-transfer chain of the phosphoenolpyruvate:phosphotransferase system through phylogenetic analyses and genome context

Iñaki Comas, Fernando González-Candelas, Manuel Zúñiga

Journal:

BMC Evolutionary Biology

Year:

2008

Language:

english

File:

PDF, 1.09 MB

english, 2008

13

Genotyping of Genetically Monomorphic Bacteria: DNA Sequencing in Mycobacterium tuberculosis Highlights the Limitations of Current Methodologies

Comas, Iñaki, Homolka, Susanne, Niemann, Stefan, Gagneux, Sebastien, Litvintseva, Anastasia P.

Journal:

Year:

2009

Language:

english

File:

PDF, 776 KB

english, 2009

14

Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis

Cortes, Teresa, Schubert, Olga T., Rose, Graham, Arnvig, Kristine B., Comas, Iñaki, Aebersold, Ruedi, Young, Douglas B.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.67 MB

english, 2013

15

Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis

Cortes, Teresa, Schubert, Olga T., Rose, Graham, Arnvig, Kristine B., Comas, Iñaki, Aebersold, Ruedi, Young, Douglas B.

Journal:

Year:

2014

File:

PDF, 78 KB

2014

16

Genetic diversity within Mycobacterium tuberculosis complex impacts on the accuracy of genotypic pyrazinamide drug-susceptibility assay

Köser, Claudio U., Comas, Iñaki, Feuerriegel, Silke, Niemann, Stefan, Gagneux, Sebastien, Peacock, Sharon J.

Journal:

Year:

2014

Language:

english

File:

PDF, 341 KB

english, 2014

17

Recombination drives genome evolution in outbreak-related Legionella pneumophila isolates

Sánchez-Busó, Leonor, Comas, Iñaki, Jorques, Guillermo, González-Candelas, Fernando

Journal:

Nature Genetics

Year:

2014

Language:

english

File:

PDF, 2.03 MB

english, 2014

18

Southern East Asian origin and coexpansion of Mycobacterium tuberculosis Beijing family with Han Chinese

Luo, Tao, Comas, Iñaki, Luo, Dan, Lu, Bing, Wu, Jie, Wei, Lanhai, Yang, Chongguang, Liu, Qingyun, Gan, Mingyu, Sun, Gang, Shen, Xin, Liu, Feiying, Gagneux, Sebastien, Mei, Jian, Lan, Rushu, Wan, Kangl

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

19

Two New Rapid SNP-Typing Methods for Classifying Mycobacterium tuberculosis Complex into the Main Phylogenetic Lineages

Stucki, David, Malla, Bijaya, Hostettler, Simon, Huna, Thembela, Feldmann, Julia, Yeboah-Manu, Dorothy, Borrell, Sonia, Fenner, Lukas, Comas, Iñaki, Coscollà, Mireia, Gagneux, Sebastien, Mokrousov, Ig

Journal:

Year:

2012

Language:

english

File:

PDF, 386 KB

english, 2012

20

The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex

Bentley, Stephen D., Comas, Iñaki, Bryant, Josephine M., Walker, Danielle, Smith, Noel H., Harris, Simon R., Thurston, Scott, Gagneux, Sebastien, Wood, Jonathan, Antonio, Martin, Quail, Michael A., Ge

Journal:

PLoS Neglected Tropical Diseases

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

21

The Past and Future of Tuberculosis Research

Comas, Iñaki, Gagneux, Sebastien, Manchester, Marianne

Journal:

Year:

2009

Language:

english

File:

PDF, 537 KB

english, 2009

22

From Phylogenetics to Phylogenomics: The Evolutionary Relationships of Insect Endosymbiotic γ-Proteobacteria as a Test Case

Comas, Iñaki, Moya, Andrés, González-Candelas, Fernando

Journal:

Systematic Biology

Year:

2007

Language:

english

File:

PDF, 2.27 MB

english, 2007

23

Persistent infection by a Mycobacterium tuberculosis advantageous strain responsible for a massive outbreak

Pérez-Lago, Laura, Navarro, Yurena, Montilla, Pedro, Comas, Iñaki, Herranz, Marta, Rodríguez Gallego, Carlos, Ruiz Serrano, María Jesús, Bouza, Emilio, García-de-Viedma, Darío

Journal:

Journal of Clinical Microbiology

Year:

2015

Language:

english

File:

PDF, 972 KB

english, 2015

24

Draft Genome Sequences of Mycobacterium setense Type Strain DSM-45070 and the Nonpathogenic Strain Manresensis, Isolated from the Bank of the Cardener River in Manresa, Catalonia, Spain

Rech, Gabriel, Vilaplana, Cristina, Velasco, Juan, Pluvinet, Raquel, Santín, Sheila, Prat, Cristina, Julián, Esther, Alcaide, Fernando, Comas, Iñaki, Sumoy, Lauro, Cardona, Pere-Joan

Journal:

Genome Announcements

Year:

2015

Language:

english

File:

PDF, 156 KB

english, 2015

25

Population Genomics of Mycobacterium tuberculosis in Ethiopia Contradicts the Virgin Soil Hypothesis for Human Tuberculosis in Sub-Saharan Africa

Comas, Iñaki, Hailu, Elena, Kiros, Teklu, Bekele, Shiferaw, Mekonnen, Wondale, Gumi, Balako, Tschopp, Rea, Ameni, Gobena, Hewinson, R. Glyn, Robertson, Brian D., Goig, Galo A., Stucki, David, Gagneux,

Journal:

Current Biology

Year:

2015

Language:

english

File:

PDF, 1.07 MB

english, 2015

26

Ultra-fast assessment of the presence of a high-risk Mycobacterium tuberculosis strain in a population

Pérez-Lago, Laura, Herranz, Marta, Comas, Iñaki, Ruiz-Serrano, María Jesús, López Roa, Paula, Bouza, Emilio, García-de-Viedma, Darío

Journal:

Journal of Clinical Microbiology

Year:

2015

Language:

english

File:

PDF, 782 KB

english, 2015

27

Legionella effectors reflect strength in diversity

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 750 KB

english, 2016

28

Subtle genotypic changes can be observed soon after diagnosis in Mycobacterium tuberculosis infection

Pérez-Lago, Laura, Borlado, Ana Isabel Rodríguez, Comas, Iñaki, Herranz, Marta, Ruiz-Serrano, María Jesús, Bouza, Emilio, García-de-Viedma, Darío

Journal:

International Journal of Medical Microbiology

Year:

2016

Language:

english

File:

PDF, 632 KB

english, 2016

29

Draft Genome Sequence of Mycobacterium brumae ATCC 51384

D'Auria, Giuseppe, Torrents, Eduard, Luquin, Marina, Comas, Iñaki, Julián, Esther

Journal:

Genome Announcements

Year:

2016

Language:

english

File:

PDF, 176 KB

english, 2016

30

From Phylogenetics to Phylogenomics: The Evolutionary Relationships of Insect Endosymbiotic γ-Proteobacteria as a Test Case

Iñaki Comas, Andrés Moya and Fernando González-Candelas

Journal:

Systematic Biology

Year:

2007

Language:

english

File:

PDF, 2.73 MB

english, 2007

31

Urgent implementation in a hospital setting of a strategy to rule out secondary cases caused by imported XDR tuberculosis at diagnosis

Pérez-Lago, Laura, Martínez-Lirola, Miguel, García, Sergio, Herranz, Marta, Mokrousov, Igor, Comas, Iñaki, Martínez, Llúcia, Bouza, Emilio, García de Viedma, Darío

Journal:

Journal of Clinical Microbiology

Year:

2016

Language:

english

File:

PDF, 1.29 MB

english, 2016

32

Secuenciación masiva para el diagnóstico y la epidemiología de tuberculosis

Comas, Iñaki, Gil, Ana

Journal:

Enfermedades Infecciosas y Microbiología Clínica

Year:

2016

File:

PDF, 219 KB

2016

33

A novel strategy based on genomics and specific PCR reveals how a multidrug resistant Mycobacterium tuberculosis strain became prevalent in Equatorial Guinea 15 years after its emergence

Pérez-Lago, Laura, Izco, Santiago, Herranz, Marta, Tudó, Griselda, Carcelén, María, Comas, Iñaki, Sierra, Olalla, González, Juliá, Ruiz-Serrano, María Jesús, Eyene, Juan, Bouza, Emilio, García-de-Vied

Journal:

Clinical Microbiology and Infection

Year:

2016

Language:

english

File:

PDF, 919 KB

english, 2016

34

New Genome-Wide Algorithm Identifies Novel In-Vivo Expressed Mycobacterium Tuberculosis Antigens Inducing Human T-Cell Responses with Classical and Unconventional Cytokine Profiles

Coppola, Mariateresa, van Meijgaarden, Krista E., Franken, Kees L. M. C., Commandeur, Susanna, Dolganov, Gregory, Kramnik, Igor, Schoolnik, Gary K., Comas, Inaki, Lund, Ole, Prins, Corine, van den Eed

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 2.60 MB

english, 2016

35

Gene expression models based on a reference laboratory strain are poor predictors of Mycobacterium tuberculosis complex transcriptional diversity

Chiner-Oms, Álvaro, González-Candelas, Fernando, Comas, Iñaki

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.08 MB

english, 2018

36

The Troika Host–Pathogen–Extrinsic Factors in Tuberculosis: Modulating Inflammation and Clinical Outcomes

Bastos, Helder Novais, Osório, Nuno S., Gagneux, Sebastien, Comas, Iñaki, Saraiva, Margarida

Journal:

Frontiers in Immunology

Year:

2018

Language:

english

File:

PDF, 3.14 MB

english, 2018

37

In-Depth Characterization and Functional Analysis of Clonal Variants in a Mycobacterium tuberculosis Strain Prone to Microevolution

Navarro, Yurena, Pérez-Lago, Laura, Herranz, Marta, Sierra, Olalla, Comas, Iñaki, Sicilia, Javier, Bouza, Emilio, García de Viedma, Darío

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 852 KB

english, 2017

38

Mycobacterium tuberculosis Acquires Limited Genetic Diversity in Prolonged Infections, Reactivations and Transmissions Involving Multiple Hosts

Herranz, Marta, Pole, Ilva, Ozere, Iveta, Chiner-Oms, Álvaro, Martínez-Lirola, Miguel, Pérez-García, Felipe, Gijón, Paloma, Serrano, María Jesús Ruiz, Romero, Laura Clotet, Cuevas, Oscar, Comas, Iñaki

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 1.04 MB

english, 2018

39

Phylogenetic analysis of vitamin B12-related metabolism in Mycobacterium tuberculosis

Young, Douglas B., Comas, Iñaki, de Carvalho, Luiz P. S.

Journal:

Frontiers in Molecular Biosciences

Year:

2015

Language:

english

File:

PDF, 4.31 MB

english, 2015

40

TB Transmission: Closing the Gaps

Comas, Iñaki, Gardy, Jennifer L.

Journal:

Year:

2018

Language:

english

File:

PDF, 236 KB

english, 2018

41

Human Macrophage Responses to Clinical Isolates from the Mycobacterium tuberculosis Complex Discriminate between Ancient and Modern Lineages

Portevin, Damien, Gagneux, Sébastien, Comas, Iñaki, Young, Douglas, Bessen, Debra E.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.05 MB

english, 2011

42

Estudios de epidemiología molecular en población inmigrante en España

González-Candelas, Fernando, Alma Bracho, María, Comas, Iñaki, d'Auria, Giuseppe, Dunková, Mária, García, Rodrigo, Gosalbes, María José, Isaac, Sandrine, Latorre, Amparo, López-Labrador, Francisco Xa

Journal:

Revista Española de Salud Pública

Year:

2014

File:

PDF, 2.62 MB

2014

43

Simplified Model to Survey Tuberculosis Transmission in Countries Without Systematic Molecular Epidemiology Programs

Domínguez, Juan, Acosta, Fermín, Pérez-Lago, Laura, Sambrano, Dilcia, Batista, Victoria, De La Guardia, Carolina, Abascal, Estefanía, Chiner-Oms, Álvaro, Comas, Iñaki, González, Prudencio, Bravo, Jaim

Journal:

Emerging Infectious Diseases

Year:

2019

File:

PDF, 924 KB

2019

44

Simplified Model to Survey Tuberculosis Transmission in Countries Without Systematic Molecular Epidemiology Programs

Domínguez, Juan, Acosta, Fermín, Pérez-Lago, Laura, Sambrano, Dilcia, Batista, Victoria, De La Guardia, Carolina, Abascal, Estefanía, Chiner-Oms, Álvaro, Comas, Iñaki, González, Prudencio, Bravo, Jaim

Journal:

Emerging Infectious Diseases

Year:

2019

Language:

english

File:

PDF, 924 KB

english, 2019

45

The Future of TB Resistance Diagnosis: The Essentials on Whole Genome Sequencing and Rapid Testing Methods

Moreno-Molina, Miguel, Comas, Iñaki, Furió, Victoria

Journal:

Archivos de Bronconeumología (English Edition)

Year:

2019

Language:

english

File:

PDF, 416 KB

english, 2019

46

Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex

Chiner-Oms, Álvaro, Berney, Michael, Boinett, Christine, González-Candelas, Fernando, Young, Douglas B., Gagneux, Sebastien, Jacobs, William R., Parkhill, Julian, Cortes, Teresa, Comas, Iñaki

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.58 MB

english, 2019

47

Evolutionary dissection of the Dot/Icm system based on comparative genomics of 58 Legionella species

Laura, Gomez-Valero, Alvaro, Chiner-Oms, Iñaki, Comas, Carmen, Buchrieser, Hershberg, Ruth

Journal:

Genome Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 2.05 MB

english, 2019

48

Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex

Chiner-Oms, Álvaro, Berney, Michael, Boinett, Christine, González-Candelas, Fernando, Young, Douglas B., Gagneux, Sebastien, Jacobs, William R., Parkhill, Julian, Cortes, Teresa, Comas, Iñaki

Journal:

Nature Communications

Year:

2019

File:

PDF, 1.58 MB

2019

49

Evolutionary dissection of the Dot/Icm system based on comparative genomics of 58 Legionella species

Laura, Gomez-Valero, Alvaro, Chiner-Oms, Iñaki, Comas, Carmen, Buchrieser, Hershberg, Ruth

Journal:

Genome Biology and Evolution

Year:

2019

File:

PDF, 2.05 MB

2019

50

Development and application of affordable SNP typing approaches to genotype Mycobacterium tuberculosis complex strains in low and high burden countries

Cancino-Muñoz, Irving, Gil-Brusola, Ana, Torres-Puente, Manuela, Mariner-Llicer, Carla, Dogba, John, Akinseye, Victor, Adesokan, Kehinde, Kwaghe, Ayi, Ejeh, Francis, Cadmus, Simeon, Comas, Iñaki

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 3.54 MB

english, 2019

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